PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35887
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 306aa    MW: 34629.6 Da    PI: 8.7772
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35887genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.66.8e-194692248
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               g+WT+eEd++l+ +v+q+G g+W++ + + g+ R++k+c+ rw +yl
  Tp57577_TGAC_v2_mRNA35887 46 GAWTPEEDKKLIAYVTQHGHGNWHSLPTRAGLLRCGKSCRRRWINYL 92
                               89*****************************99************97 PP
2Myb_DNA-binding52.89.4e-1798141146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg+++ eEd+ + +++++lG++ W+tIa+ ++ +Rt++++k++w++
  Tp57577_TGAC_v2_mRNA35887  98 RGNFSLEEDQTITQLHALLGNK-WATIAALLP-RRTDNDIKNHWNT 141
                                89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4764092IPR017930Myb domain
SuperFamilySSF466891.68E-2944139IPR009057Homeodomain-like
SMARTSM007171.7E-134494IPR001005SANT/Myb domain
PfamPF002492.9E-164592IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-234699IPR009057Homeodomain-like
CDDcd001673.73E-124792No hitNo description
PROSITE profilePS5129425.09393147IPR017930Myb domain
SMARTSM007171.1E-1497145IPR001005SANT/Myb domain
PfamPF002499.0E-1598141IPR001005SANT/Myb domain
CDDcd001672.20E-10100143No hitNo description
Gene3DG3DSA:1.10.10.601.3E-24100148IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MYCVLSASQV YMTMGKTMIM NNSIRFTSNS TCCHFKMSKM PVLKTGAWTP EEDKKLIAYV  60
TQHGHGNWHS LPTRAGLLRC GKSCRRRWIN YLRPDLKRGN FSLEEDQTIT QLHALLGNKW  120
ATIAALLPRR TDNDIKNHWN TNIKKRLIKM GIDPITHKPK SNIKDNINIA LKHKAQWESV  180
RLEAEARSSM LSKVQTQPLI CSSSSPNFSI TKPNNAMDNM CAIMVANDDD PLYPNMHCNV  240
LYNNTNNIME TNGQEIMHSY ASNLQGDDDI MVALEAFRDS FNGDTFMDFN GNGMCNFDAG  300
YAFSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-29401472108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35887
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT5735054e-79CT573505.1 Medicago truncatula chromosome 5 clone mth2-15a1, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613875.31e-117transcription factor MYB16
SwissprotQ9LXF11e-71MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A2K3MR360.0A0A2K3MR36_TRIPR; MYB transcription factor
STRINGAES968331e-113(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.24e-74myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]