PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35944
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 698aa    MW: 77863.6 Da    PI: 5.639
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35944genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41.1e-07120142427
                                ---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                ++C ff++ G+C  GdrC F Hgp
  Tp57577_TGAC_v2_mRNA35944 120 VPCIFFQK-GYCLKGDRCAFQHGP 142
                                69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.6062453IPR000571Zinc finger, CCCH-type
SMARTSM003560.0022552IPR000571Zinc finger, CCCH-type
PfamPF156634.8E-122579No hitNo description
PROSITE profilePS5010311.2725581IPR000571Zinc finger, CCCH-type
SMARTSM003560.0115780IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5116142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.558116143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5117141IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-5120142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4121141IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MVAQQPQLQI QTQQPTPSPQ DEALKRNTDC VYFLASPLTC KKGNECEYRH SEYARVNPRD  60
CYYWLNGNCL NPKCSFRHPP LDGLLGTPTA TTPAGPSVPA PQIAATSAAH APYNSSKQAV  120
PCIFFQKGYC LKGDRCAFQH GPIPNNGSKL ATQGSLTNQG AENPSFKKPF GGIEKHTQER  180
KTSQGNVATF GGAEAKPVQK FETAPQKNIF KLEKRVAPPP AGFDSEASRF KTPSSPPPAN  240
GPNVSRSNRV HQPRVPDDHS FHSGKDSDEF LRESSPGFDV LVADELRNSD YYHGEDEFGK  300
ARGQDERGLD SLNEFDVGHS ADYSLAADID RERFRGPQGY DSYDHLQEPY GWDPRKASAH  360
IERRTHHRSG SPPDSVEVSD LRHRLSKRRK GNGLKSVVAH DYALESHGEE RSHRFPRKDS  420
HRLPSNERPV NNRFRGRITL PPNGGDGHLE RDLDRGRDLE RGRDSDRGRI SSRLSSGRLR  480
TPPEGRFHDR MRGRLSDDEK GERGNFRGRS MGDRSGFSAP KSLAELKYGR STDNNEQQSL  540
GKRKSFRDHQ QYEDDVPFEG PKPLSEILKE KKGVGAGEAS SQSRKSAFNN NEGITENGAL  600
PETETKEDES KVQAADGVEN TDATHGQSSE DGMIYDEAAE DQEYEGDDQR EDGDYEYEQG  660
DEEYDYEQVE EGENQEQEYM EDEDGDDFAK KIGVVLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35944
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504622.10.0zinc finger CCCH domain-containing protein 17
TrEMBLA0A2K3MVL00.0A0A2K3MVL0_TRIPR; Zinc finger CCCH domain-containing protein 17-like
STRINGXP_004504622.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137