PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35957
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 162aa    MW: 18946.2 Da    PI: 9.3439
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35957genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.4e-18691511096
                                HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                         B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                   s r+ +p+ f++ + +++ +  k  +l+d +g+ W v+   r  +g+ ++ +GWk+F ++n L+e+Df+vF++++++ f  
  Tp57577_TGAC_v2_mRNA35957  69 EKHSERMLIPNAFVSLMlSKQ-KVLKNFILRDHRGKDWHVRA--RPIGGKLYFNDGWKRFREENCLEENDFLVFTHIENNVF-- 147
                                4567899*******7776444.45579***************..********************************999999.. PP

                                EEEE CS
                         B3  93 vvkv 96 
                                ++k+
  Tp57577_TGAC_v2_mRNA35957 148 KFKI 151
                                5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-1957153IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-1957153IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.23960155IPR003340B3 DNA binding domain
SMARTSM010193.2E-1162155IPR003340B3 DNA binding domain
PfamPF023629.5E-1666151IPR003340B3 DNA binding domain
CDDcd100172.74E-1571152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDLFIEENKL LIINIKGFIQ CLKPKLHSFL STQVCVCVSS SSIHSRDNQI MTNIAKETFP  60
DFLTVFLAEK HSERMLIPNA FVSLMLSKQK VLKNFILRDH RGKDWHVRAR PIGGKLYFND  120
GWKRFREENC LEENDFLVFT HIENNVFKFK ILELSSIREV K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35957
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635040.11e-58B3 domain-containing protein REM20
TrEMBLA0A2Z6N3083e-60A0A2Z6N308_TRISU; Uncharacterized protein
STRINGXP_004497762.11e-47(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.18e-13B3 family protein