PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36086
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 157aa    MW: 17857.8 Da    PI: 10.2486
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36086genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.15.4e-141048240
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                               +i++ s r+ t+ kR++gi+KK +EL +LC++ ++ ii 
  Tp57577_TGAC_v2_mRNA36086 10 FISDASARKATYKKRKKGIIKKVSELTILCGIPACAIIS 48
                               89*********************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.5E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.488147IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-21181IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-7323IPR002100Transcription factor, MADS-box
PfamPF003195.8E-141050IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MTRKKVKLAF ISDASARKAT YKKRKKGIIK KVSELTILCG IPACAIISNP FDSKTEVWPD  60
LAGAKQIIER YQNSSVIDGA KNVNQESFLL QRITKAKEQL RKQKHDNHEK ELTVRMIGYM  120
KNNQLPDDLS VSDLKEFDKL IEKNLKDLDN KIVELN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFISDASARKATYKKRK
22125KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36086
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614286.11e-84agamous-like MADS-box protein AGL80
TrEMBLA0A2K3MD001e-109A0A2K3MD00_TRIPR; Agamous-like mads-box protein agl80-like
STRINGAES972445e-84(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-33AGAMOUS-like 80