PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36167
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 248aa    MW: 27979.8 Da    PI: 6.117
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36167genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.76.8e-071932402673
                       FAR1  26 geitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 
                                ++i  + f C  eg+ + +  + +ke+r+++++r++Cka+l+++++k+
  Tp57577_TGAC_v2_mRNA36167 193 ENIRLACFFCHHEGSVSLKIIDPSKEQRKKESSRCECKAHLRISLQKS 240
                                5677788*************999*********************9984 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
LPSYAAAGGI GDIMRSNYGM PWNSWKQIDI NMRDLWFGEF KKKFNFCPPD DSWAGKNFER  60
RGAAVMKNNL NKPSFPTRRL CDGFLALHHP LLWSIFGGLL HVSSSAVDFH GCFVLPSAVF  120
PSSSEMINNI MDSANVIDMN FDLNECLIKD ISHENGNSTI IVEHFDHAIV ANDVLEVDDI  180
ESFEKENPVP FSENIRLACF FCHHEGSVSL KIIDPSKEQR KKESSRCECK AHLRISLQKS  240
HDIYPSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36167
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1516549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.12e-06FAR1-related sequence 11