PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36206
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 354aa    MW: 38734.4 Da    PI: 5.6814
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36206genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.7e-18245279135
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                C +Cgt kTp+WR gp g+ktLCnaCG+++++ +l
  Tp57577_TGAC_v2_mRNA36206 245 CLHCGTDKTPQWRTGPMGPKTLCNACGVRFKSGRL 279
                                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.2E-6733333IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.426239275IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-17239289IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15242302No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14243277IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.59E-15244291No hitNo description
PfamPF003203.0E-16245279IPR000679Zinc finger, GATA-type
PROSITE patternPS003440245270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEAPDYFVGG YYGAGVHGGI DQFSPEKRHI HGGGADQKPC ESFAIDDLLD FSNADAIMSD  60
GFFDNVAGNS TDSSNVTAVD SCNSSGSGGE NRFSGTIVPY GFSGDVQLNG ELCVPYDEMA  120
ELEWLSNFVE DSYSAEEELK TLQLLSGAGA VKPQTPESSS STDTQTAFSS DESGANAXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XTRLLHIPDA PPQQMKIVQV KKREDPNVEC  240
SGRKCLHCGT DKTPQWRTGP MGPKTLCNAC GVRFKSGRLV PEYRPAASPT FVSAKHSNSH  300
RKVLELRRQK EMQRSQHQQL LSHSSIFGVS SNGGDDFINY HHHHCGPEFR HVI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36206
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1660462e-84AC166046.15 Medicago truncatula chromosome 8 clone mth2-6p7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510295.10.0GATA transcription factor 9-like
TrEMBLA0A2K3LBT30.0A0A2K3LBT3_TRIPR; GATA transcription factor
STRINGXP_004510295.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.17e-69GATA transcription factor 9