PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36209
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 232aa    MW: 25679.2 Da    PI: 4.6165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36209genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.4e-184998255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  Tp57577_TGAC_v2_mRNA36209 49 TYHGVRKRN-WGKWVSEIREPKK---KSRIWLGTFSTPEMAARAHDVAALTIKG 98
                               69****887.**********854...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.66E-2149107IPR016177DNA-binding domain
PfamPF008471.2E-114998IPR001471AP2/ERF domain
SMARTSM003801.6E-3549112IPR001471AP2/ERF domain
PROSITE profilePS5103222.78749106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3149107IPR001471AP2/ERF domain
PRINTSPR003678.4E-105061IPR001471AP2/ERF domain
CDDcd000181.09E-3150108No hitNo description
PRINTSPR003678.4E-107288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTQTTTTSSE TTTTSNSSTS STSSQLSHST QNKSPTKPAQ KPKDTKHPTY HGVRKRNWGK  60
WVSEIREPKK KSRIWLGTFS TPEMAARAHD VAALTIKGKT AILNFPHLSN MLPRPATSAP  120
RDIQAAATAA AAMVDFDDDD VHVTEQQCCC DDESEEQEQE LSQIVELPKI NEDGEDDSVV  180
DSVNAAEFVL LDDSVIHSSN WVYHLSHESI GFEGIEFYSN FSDDFFIPIW D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-20451111077Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36209
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1660469e-83AC166046.15 Medicago truncatula chromosome 8 clone mth2-6p7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510292.18e-88ethylene-responsive transcription factor ERF039-like
TrEMBLA0A2Z6MZZ21e-126A0A2Z6MZZ2_TRISU; Uncharacterized protein
STRINGXP_004510292.13e-87(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.17e-38ERF family protein