PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36392
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 143aa    MW: 16341 Da    PI: 9.8354
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36392genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.81.6e-14544443
                               -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                     SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                                ++s+r  tf+kR++g++KK  E+ +LC++e + iifs++
  Tp57577_TGAC_v2_mRNA36392  5 IDNSKRRATFIKRKKGLIKKIDEITTLCGVEGCAIIFSQN 44
                               56788889******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-8153IPR002100Transcription factor, MADS-box
CDDcd002661.77E-22176No hitNo description
PROSITE profilePS5006614.129144IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-20288IPR002100Transcription factor, MADS-box
PfamPF003191.5E-14444IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
LAYIIDNSKR RATFIKRKKG LIKKIDEITT LCGVEGCAII FSQNDPQPAI WPSPSGVHTV  60
LSRFSSLPEL EQSKKMQNQE SFLMGRIRKG EEQLNKLRNE NKKKELTQLM FQCLNAGQII  120
DDVNMNDVNG LYWLIEQNMK KN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36392
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500454.17e-71agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-37AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2K3JXP15e-74A0A2K3JXP1_TRIPR; Agamous-like mads-box protein agl80-like (Fragment)
STRINGXP_004500454.13e-70(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-34AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]