PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA36406

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 84aa MW: 9953.42 Da PI: 9.984

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA36406	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	31	7.3e-10	1	23	106	128
NAM 106 LvfykgrapkgektdWvmheyrl 128 Lvfykgr pkg kt+W+mheyrl Tp57577_TGAC_v2_mRNA36406 1 LVFYKGRPPKGIKTNWIMHEYRL 23 8********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.965	1	50	IPR003441	NAC domain
SuperFamily	SSF101941	6.8E-15	1	50	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
LVFYKGRPPK GIKTNWIMHE YRLIGSQKQT SKHIGSMRLD DWVLCRIYKK KQVGKTLQQK 60 EEYSTLQFND STITNNDGEQ EMMN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-17	1	51	120	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-17	1	51	120	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-17	1	51	120	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-17	1	51	120	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-17	1	51	123	169	NAC domain-containing protein 19
3swm_B	2e-17	1	51	123	169	NAC domain-containing protein 19
3swm_C	2e-17	1	51	123	169	NAC domain-containing protein 19
3swm_D	2e-17	1	51	123	169	NAC domain-containing protein 19
3swp_A	2e-17	1	51	123	169	NAC domain-containing protein 19
3swp_B	2e-17	1	51	123	169	NAC domain-containing protein 19
3swp_C	2e-17	1	51	123	169	NAC domain-containing protein 19
3swp_D	2e-17	1	51	123	169	NAC domain-containing protein 19
4dul_A	2e-17	1	51	120	166	NAC domain-containing protein 19
4dul_B	2e-17	1	51	120	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA36406

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM237304	5e-85	HM237304.1 Medicago sativa isolate A NAC protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003607731.1	2e-48	NAC transcription factor 29
Refseq	XP_012572610.1	1e-48	NAC transcription factor 29
Swissprot	K4BWV2	6e-29	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	D9J0A6	3e-48	D9J0A6_MEDSA; NAC protein
STRING	AES89928	6e-48	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17306	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	3e-28	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA36406

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]