PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36465
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 234aa    MW: 25797.1 Da    PI: 10.2228
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36465genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017171193223
                                EETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                 C  Cg++F+  ++L+ H+ + H
  Tp57577_TGAC_v2_mRNA36465 171 ACDQCGEVFPKIESLELHQAVrH 193
                                69*****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.767170198IPR007087Zinc finger, C2H2
PROSITE patternPS000280170193IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
LVNQQQKQEQ KQKQKQKPKP KQKPPSSWDQ IKNILTCKQI EGSKVHDPSK PNNNNGYSKL  60
GSSCSSICSF RDVVHGNTRV VHRSDNSSPE SSILGQETSL LKRKPVTASS SSSSTRSASC  120
SGKSSNGGRN YTTSSSSSSR RMQFRKLSGC YECHMIVDPS RLPIPRSTVC ACDQCGEVFP  180
KIESLELHQA VRHAVSELGL EDSGRNIVEI IFKSRIADEI KQIMETLSRS RSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36465
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1496060.0BT149606.1 Medicago truncatula clone JCVI-FLMt-20P4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589472.11e-120uncharacterized protein LOC11428088
TrEMBLG7I7601e-118G7I760_MEDTR; C2H2-like zinc finger protein
STRINGAES597231e-119(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.17e-66C2H2-like zinc finger protein