PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3647
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 470aa    MW: 54207.1 Da    PI: 6.4355
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3647genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.31.4e-132333171397
                               TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                        B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                               + rl++p  f +e++ ++  ++  ++++  +   W v l  + + + +++++GWk+F ++++L++gD++ F+ ++r+  ++++++
  Tp57577_TGAC_v2_mRNA3647 233 TLRLRIPTWFSKEYM-NELLQRNAMIRSvDEEMAWGVSLYLDESNRNFTMGAGWKSFSREHNLQVGDVCKFETTQREPLSFTITI 316
                               4589**********5.44666788889945559******77999999*************************8888888777777 PP

                               E CS
                        B3  97 f 97 
                               +
  Tp57577_TGAC_v2_mRNA3647 317 V 317
                               5 PP
2B340.74.2e-133824591090
                               HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                        B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                               v++++ lv+p + +++h++++ +s++l++      +W v+++y+++ +  ++t+GWkeFv++ ++k gD+++F++++ ++ 
  Tp57577_TGAC_v2_mRNA3647 382 VTSLDKLVIPSELLKRHNISNGNSVELKV---GEGTWFVEVSYNQYLDYGWFTEGWKEFVRECKVKIGDTCLFEMIDVQNH 459
                               678899***********999777766664...4589**************************************8865444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-1113105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-1215105IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.03417106IPR003340B3 DNA binding domain
CDDcd100172.14E-831104No hitNo description
Gene3DG3DSA:2.40.330.102.3E-13214315IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-15215315IPR015300DNA-binding pseudobarrel domain
CDDcd100171.79E-12218316No hitNo description
PROSITE profilePS5086312.478221320IPR003340B3 DNA binding domain
SMARTSM010195.0E-6224320IPR003340B3 DNA binding domain
PfamPF023628.7E-11231317IPR003340B3 DNA binding domain
PROSITE profilePS508639.939373469IPR003340B3 DNA binding domain
SMARTSM010195.5E-6378469IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-15378465IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-13380460IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-10382462IPR003340B3 DNA binding domain
CDDcd100171.21E-14382466No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MMSIHHGRGS DAKGIHFYQT IQLRELQDQE LLIPRNFVER YWKDVSNPIS LRLPNDSVCK  60
MFWVRWGDEI WLQDWKRFAR SLRCGDLLVF QYKGGSDFNV TIFDDSKLEI DYSNMICIDE  120
QEAKESDEDG YVKITNEGDN TKQPLKKKKI NSNDSATTAA TPQVTNIDKR KINMKATQQK  180
LPEANRNRKG NGKKAKKCSK IVDANKRSCT DSHPDENPNF TLKLSRFSVE GDTLRLRIPT  240
WFSKEYMNEL LQRNAMIRSV DEEMAWGVSL YLDESNRNFT MGAGWKSFSR EHNLQVGDVC  300
KFETTQREPL SFTITIVPAT KEPCPEQFQE NQRVQENSET SPVEDMGYVG NNYGEGISRS  360
CPNHGIKNSE SPNLHNKFEV FVTSLDKLVI PSELLKRHNI SNGNSVELKV GEGTWFVEVS  420
YNQYLDYGWF TEGWKEFVRE CKVKIGDTCL FEMIDVQNHV FKFSIILDV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3647
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630376.11e-114B3 domain-containing protein REM16
TrEMBLA0A2K3P3M10.0A0A2K3P3M1_TRIPR; B3 domain-containing transcription factor vrn1-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-19B3 family protein