PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36621
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 218aa    MW: 24895.7 Da    PI: 10.0417
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36621genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.48.1e-091748132
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                               +g W+++Ed++l+d+++++G  +W+t ++  g
  Tp57577_TGAC_v2_mRNA36621 17 KGVWSKQEDQKLIDYINKHGEVCWSTLPQAAG 48
                               799*****************99****999888 PP
2Myb_DNA-binding52.11.5e-1694138147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg++ ++E++l+v+++++lG++ W++Ia +++ gRt++++k++w+++
  Tp57577_TGAC_v2_mRNA36621  94 RGNFGEDEEDLIVKLHALLGNR-WSLIAGRLP-GRTDNEVKNFWNSH 138
                                89********************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.4181260IPR017930Myb domain
SMARTSM007171.0E-81690IPR001005SANT/Myb domain
SuperFamilySSF466892.05E-2017140IPR009057Homeodomain-like
PfamPF002491.5E-61748IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-211995IPR009057Homeodomain-like
CDDcd001676.15E-72088No hitNo description
PROSITE profilePS5129424.9389143IPR017930Myb domain
SMARTSM007176.0E-1593141IPR001005SANT/Myb domain
PfamPF002496.9E-1594138IPR001005SANT/Myb domain
CDDcd001674.47E-1096139No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2596144IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MRKPSCDIKL DKNIKNKGVW SKQEDQKLID YINKHGEVCW STLPQAAGNS RMHVTLLFFI  60
TTLINLVSCS LGLLRCGKSC RLRWMNYLRP DLKRGNFGED EEDLIVKLHA LLGNRWSLIA  120
GRLPGRTDNE VKNFWNSHIR KKLIRKGINP NNHSVNHKIP PLQNQIMSNS LKYFGLKDIS  180
KNQTTKTHVD NDDKVSNATS DKDESYALLD LNLELSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251614326128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36621
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT6991080.0KT699108.1 Trifolium repens MYB133 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020239347.18e-93transcription factor MYB3
TrEMBLA0A0Y0GNL01e-114A0A0Y0GNL0_TRIRP; MYB133
STRINGXP_007157714.11e-88(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.13e-64myb domain protein 6