PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36717
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 286aa    MW: 32300.1 Da    PI: 5.8026
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36717genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.4e-184998255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Tp57577_TGAC_v2_mRNA36717 49 KFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAAFAYDKAALSIKG 98
                               678******.**********965...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-2049107IPR016177DNA-binding domain
PROSITE profilePS5103221.00849106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2849106IPR001471AP2/ERF domain
CDDcd000187.20E-3049105No hitNo description
SMARTSM003803.8E-3449112IPR001471AP2/ERF domain
PRINTSPR003676.7E-85061IPR001471AP2/ERF domain
PfamPF008474.7E-105198IPR001471AP2/ERF domain
PRINTSPR003676.7E-87288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSTSRTSNTS LKGHYHPHNQ TQINLSLLKR NTSVCSEKRG RRKQTEPGKF LGVRRRPWGR  60
YAAEIRDPST KERHWLGTFD TAEEAAFAYD KAALSIKGSN ARTNFIYSTE SDETNLHNVV  120
TSLDVQKTQP TNQIEEQNSS HLNNLNNENL FFSNDYNNSG YLECIVPVNC FKPISNTNNS  180
NFDHNSNAND VVDSISTTNY FMQGQSFYDH YTPFSQESIN IDTEINDGLS WDCNYNELSA  240
IFNKPLRSNE SPSYGLMTTH DVSSTTYSSP SYSSFGDVDM GYSLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2040105571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36717
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1862951e-112AC186295.3 Medicago truncatula chromosome 2 BAC clone mth2-26g6, complete sequence.
GenBankAC2053911e-112AC205391.2 Medicago truncatula chromosome 2 BAC clone mth2-38p15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593957.11e-141ethylene-responsive transcription factor LEP
TrEMBLA0A2K3NNE30.0A0A2K3NNE3_TRIPR; Ethylene-responsive transcription factor erf086-like protein
STRINGAES642081e-140(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-35ERF family protein