PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36721
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 484aa    MW: 52496.2 Da    PI: 7.802
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36721genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.4e-115173527
                               --SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                                C +++rtG+C +G+rC+F+H++
  Tp57577_TGAC_v2_mRNA36721 51 DCTYYLRTGFCGFGSRCRFNHPR 73
                               7********************96 PP
2zf-CCCH34.43.7e-1195119327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                ++ C++++rt  Ck+G++Ck++H++
  Tp57577_TGAC_v2_mRNA36721  95 QPVCQYYMRTRSCKFGASCKYHHPR 119
                                689********************96 PP
3zf-CCCH36.48.9e-12141165226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                ++++C++f +tG+Ck+G++CkF H+
  Tp57577_TGAC_v2_mRNA36721 141 GEKECSYFVKTGQCKFGATCKFDHP 165
                                7899********************9 PP
4zf-CCCH34.24.2e-11355378326
                                S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                 +lC +fa+ G+Ck+G+ C+F H+
  Tp57577_TGAC_v2_mRNA36721 355 AALCTHFAQRGICKFGPACRFDHP 378
                                589********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5214674IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-44673IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-64974IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-95173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-55273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.44692120IPR000571Zinc finger, CCCH-type
SMARTSM003560.001192119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-595120IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-995119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-497119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737139167IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-6139166IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9141165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5141167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4145164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99352380IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-7352379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6355382IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8355378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5357377IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEHYPRSTQP DPSPEWTGPD SQTGLEEPMW QLGLGSAAGE DSYPLRPDEI DCTYYLRTGF  60
CGFGSRCRFN HPRDRGAVIG AAARTVGEYP ERAGQPVCQY YMRTRSCKFG ASCKYHHPRQ  120
AGATDATPVS LNYYGYPLRP GEKECSYFVK TGQCKFGATC KFDHPVPASV QIPAPSPIPP  180
VSPLHVQVPS PLYPTVQPPP SGPSSQQIGV LVARPPLLPG SYVQSPYGPV VLSPTMVPFS  240
GWGPYQATAT SPVLPSGNPA NVGSTQLYGI THIPSSANAY TGPYQPSVSS VGPSSRNQKE  300
QSFQARPNQP EYHYYSKPED LPFGPSYSYH QPPDTSAPKA TVVLSPAGLP LRPGAALCTH  360
FAQRGICKFG PACRFDHPIA SLSYSPSASS LTDAPVAPYF VGSSVGTLPP SSSSPELQPE  420
PTVGSSMESV PSRXXXXXXX XXXXXXXXHI DWISWLDFVN WWPCFSIKHS EFQSFSACQY  480
RNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36721
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2053911e-115AC205391.2 Medicago truncatula chromosome 2 BAC clone mth2-38p15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593956.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ6NPN31e-134C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLG7IPY90.0G7IPY9_MEDTR; Putative transcription factor C3H family
STRINGAES642070.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-127C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]