PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36754
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 787aa    MW: 89679.6 Da    PI: 5.3317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36754genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18307357256
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Tp57577_TGAC_v2_mRNA36754 307 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 357
                                59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.63E-33306366No hitNo description
SuperFamilySSF541712.29E-22307365IPR016177DNA-binding domain
SMARTSM003802.7E-40307370IPR001471AP2/ERF domain
PROSITE profilePS5103222.932307364IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-31307365IPR001471AP2/ERF domain
PfamPF008475.0E-12308357IPR001471AP2/ERF domain
PRINTSPR003672.6E-10308319IPR001471AP2/ERF domain
PRINTSPR003672.6E-10330346IPR001471AP2/ERF domain
Gene3DG3DSA:3.40.50.18203.8E-54539776IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534741.53E-43539772IPR029058Alpha/Beta hydrolase fold
PfamPF005614.0E-19565669IPR000073Alpha/beta hydrolase fold-1
PRINTSPR004122.0E-14571589IPR000639Epoxide hydrolase-like
PRINTSPR004122.0E-14591606IPR000639Epoxide hydrolase-like
PRINTSPR004122.0E-14637650IPR000639Epoxide hydrolase-like
PRINTSPR004122.0E-14651664IPR000639Epoxide hydrolase-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
QTKSPWLSPH NQNSQLTNSH CNFQSSSKNS IDNPLDSYSA RSLXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXQVQ  300
PISTTKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA EDAALAYDRE AFKLRGENAR  360
LNFPELFLNK DKDKDKEKEK SAPSSPPPTS TNADSSVTSS TSNTVTKQPE PPPMQTLPIE  420
ESNENDSGIG SSEATVSEGG EGVSQSQELV WSEMSAWFNA IPAAWGPGSP VWDDNLFSQS  480
QNPFSNLNQH EEFNDFDPQI GSGNELGASF VLYLCFLFSF CHQNSFTHTH TNTLHPAFKM  540
ENIQHSNVEV KGLKLHVAEI GTGDKVVVFL HGFPEIWYTW RHQMIAVANA GYRAIAFDFR  600
GYGLSDHPAE PEKANLMDLV HEVKDLLDSL GISKAFLIGK DFGALPAYLV AAVYPEKVAS  660
VITLGIPFML PGPSVVQNHL LPKGFYITRW QEPGRAEADF GRFDVKSVIR NIYILFSKSE  720
IPVAGDDQEI MDLFNPSTPL PSWFSEEDLT VYASLYEKSG FRFALQVPYR SVTVESGLTD  780
PKINVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xmd_A8e-5254078735289Epoxide hydrolase A
5xmd_B8e-5254078735289Epoxide hydrolase A
5xmd_C8e-5254078735289Epoxide hydrolase A
5xmd_D8e-5254078735289Epoxide hydrolase A
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36754
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1342380.0BT134238.1 Medicago truncatula clone JCVI-FLMt-11N14 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-47ERF family protein