PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36797
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 51aa    MW: 6122.08 Da    PI: 4.6859
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36797genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.41.1e-131451139
                        NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdi 39
                               l+pGfrFhPtdeelv +yLk+k+++k+l++ e ik+vdi
  Tp57577_TGAC_v2_mRNA36797 14 LMPGFRFHPTDEELVGFYLKRKIQQKSLPI-ELIKQVDI 51
                               689***************************.89***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-131251IPR003441NAC domain
PROSITE profilePS5100516.321451IPR003441NAC domain
PfamPF023651.7E-81639IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 51 aa     Download sequence    Send to blast
MEERTEMDNK VDDLMPGFRF HPTDEELVGF YLKRKIQQKS LPIELIKQVD I
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36797
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1447292e-61BT144729.1 Medicago truncatula clone JCVI-FLMt-18B11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450964.14e-27protein FEZ isoform X2
RefseqXP_024641515.14e-27protein FEZ isoform X1
SwissprotQ9FIW52e-16NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLA0A072U5H58e-26A0A072U5H5_MEDTR; NAC domain class transcription factor
TrEMBLI3SW816e-27I3SW81_MEDTR; Uncharacterized protein
STRINGGLYMA19G02580.11e-22(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114331739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.18e-19NAC domain containing protein 94