PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA3684

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

WRKY

Protein Properties

Length: 166aa MW: 19246.1 Da PI: 4.5643

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA3684	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.4	1.1e-31	104	162	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YYrC+ gC+vkk+ver+ +dp++v++tYeg+H+h+ Tp57577_TGAC_v2_mRNA3684 104 LDDGFKWRKYGKKMVKNSPNPRNYYRCSVDGCQVKKRVERDVDDPSYVITTYEGTHTHP 162 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-33	91	163	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-28	97	163	IPR003657	WRKY domain
PROSITE profile	PS50811	29.264	99	164	IPR003657	WRKY domain
SMART	SM00774	6.4E-37	104	163	IPR003657	WRKY domain
Pfam	PF03106	1.8E-25	105	162	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MTEKNPIQPN SPDTDFINQW PMDLSEYLRF DDDDQWPDDD PEPFVSEHVI NQDNQQANEL 60 LVGDFGVIES HLEGSSSRGF ISEGERREIR DKVAFKTKSE VEILDDGFKW RKYGKKMVKN 120 SPNPRNYYRC SVDGCQVKKR VERDVDDPSY VITTYEGTHT HPSFH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-25	94	161	7	74	Probable WRKY transcription factor 4
2lex_A	4e-25	94	161	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA3684

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT967316	4e-44	CT967316.8 M.truncatula DNA sequence from clone MTH2-189G21 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003603180.2	9e-85	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	4e-43	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A2K3L8P8	1e-118	A0A2K3L8P8_TRIPR; WRKY transcription factor
STRING	XP_004501445.1	3e-84	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	4e-43	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA3684

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]