PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA36840

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 101aa MW: 10757 Da PI: 10.2978

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA36840	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	61.3	2.6e-19	38	86	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllka 48 +C aCk+lrrkC+ +C++apyf +q +++f +vhk+FGasnv+kll+ Tp57577_TGAC_v2_mRNA36840 38 PCGACKFLRRKCSGGCIFAPYFGRDQgAARFVAVHKVFGASNVSKLLSX 86 7*********************9989****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.916	37	100	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-18	38	86	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MAESQRGDGS SRNTCNKDTN AAKRAMTGAT RDESVVPPCG ACKFLRRKCS GGCIFAPYFG 60 RDQGAARFVA VHKVFGASNV SKLLSXXXXX XXXXXXXXPP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-16	38	85	11	57	LOB family transfactor Ramosa2.1
5ly0_B	6e-16	38	85	11	57	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA36840

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012568165.1	9e-37	LOB domain-containing protein 20
Swissprot	Q9SRV3	3e-24	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	A0A2K3NLU4	2e-55	A0A2K3NLU4_TRIPR; LOB domain-containing protein 20-like
STRING	XP_004489657.1	4e-36	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	1e-26	LOB domain-containing protein 20

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA36840