PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36846
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 103aa    MW: 11088 Da    PI: 9.2349
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36846genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26035.43.1e-113882144
                     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlk 44
                               +C  Ck+l+rkC+++C++a yf  +q   +fa+vhk+  + +v++
  Tp57577_TGAC_v2_mRNA36846 38 PCGDCKFLKRKCTRECIFALYFGTDQgVGSFAAVHKVKTRVEVVH 82
                               7***********************99779*******977776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.73237102IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-93881IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MVESRGGDGS SGTRRRICAN GAKRAMARVT QEVLITVPCG DCKFLKRKCT RECIFALYFG  60
TDQGVGSFAA VHKVKTRVEV VHVHEVVGGS MSCWHMLAAL LC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36846
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568165.12e-25LOB domain-containing protein 20
TrEMBLA0A2K3NLV86e-47A0A2K3NLV8_TRIPR; LOB domain-containing protein 20-like
STRINGXP_004489657.19e-25(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-11LOB domain-containing protein 20