PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA36853

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Protein Properties

Length: 337aa MW: 39064.4 Da PI: 9.0863

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA36853	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.3	1.6e-19	157	250	4	96
E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 4 vltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 +l +s+v rl++p +f +e++ ++ ++ t+++ ++r+W vk++++ +++ +v+t+GWk+F ++++L+ gD++ F+++ Tp57577_TGAC_v2_mRNA36853 157 TLARSYVEGGkIRLRIPTQFSKEYM-NELLQMNATIRSvGENRTWHVKFNFNERKRNFVMTTGWKSFSQEHNLQIGDVCKFEMT 239 55666665543799********6.5578899999997777**************************************99 PP SSSEE..EEEE CS B3 86 grsefelvvkv 96 +r+ ++++++ Tp57577_TGAC_v2_mRNA36853 240 QREPLSFTITI 250 98888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.41E-5	28	68	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.9E-7	28	69	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.6E-20	147	250	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.92E-19	149	249	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.52E-20	152	250	No hit	No description
SMART	SM01019	7.4E-12	154	254	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.493	155	254	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.3E-17	157	250	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MYQIQYPLNF QMGLIAKCVQ QGEDIWLQNW KRFARSLRCG DLLVFQYKGG SDFHVIILDD 60 SKLEIDYSSM RYNDDQEEEE RENTEQPLKK KKINSNGSVV TLQGTSIDKR KINMNATQQK 120 VSGNYSGGMA KKVKKCAKTK DGNERSCTSS NPSFTLTLAR SYVEGGKIRL RIPTQFSKEY 180 MNELLQMNAT IRSVGENRTW HVKFNFNERK RNFVMTTGWK SFSQEHNLQI GDVCKFEMTQ 240 REPLSFTITI NQATKEPIPD QFQENQLVHE KPETTPVKDM EYVGNFEEGI LRSCTKTHGL 300 KSIDLNLNYF SSLYSVHVIK YTFTNHVFFV VNYCRF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA36853

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024630307.1	2e-79	B3 domain-containing transcription factor VRN1-like
Refseq	XP_024630376.1	2e-79	B3 domain-containing protein REM16
TrEMBL	A0A072U9K2	1e-121	A0A072U9K2_MEDTR; B3 DNA-binding domain protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11472	6	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-10	B3 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA36853