PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36950
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 166aa    MW: 18849.4 Da    PI: 9.8364
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36950genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.11.3e-142670448
                               -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                     SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                               + + + q tfs+   +++ KA ELSvLC+a+ a+i+ ss+++ly+
  Tp57577_TGAC_v2_mRNA36950 26 KKSHKSQMTFSNSTLTLFNKATELSVLCNAKTALIVTSSNNELYT 70
                               667889**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.3E-71474IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.041575IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-71737IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-141785IPR002100Transcription factor, MADS-box
PfamPF003191.8E-112970IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-73752IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-75273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAFDGNNDAT KLNTRKRKFG EIKKAKKSHK SQMTFSNSTL TLFNKATELS VLCNAKTALI  60
VTSSNNELYT CGYPNCDAVI QQFLTGKDTI QDSEKKKQEK IVETLRLDYE AIGDKLEKXX  120
XXXXXXXXXX XXXXXXLVGG IILLMIWIYN LLRNLRILWK SSDLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36950
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027189143.11e-34agamous-like MADS-box protein AGL62
TrEMBLA0A2K3K6L41e-63A0A2K3K6L4_TRIPR; Agamous-like mads-box protein agl62-like
STRINGXP_004497957.12e-34(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.13e-12AGAMOUS-like 91