PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA37123
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 162aa    MW: 17684.9 Da    PI: 6.5055
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA37123genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-08119147129
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                                r+ WT+eEd +l  av+++G g+W+ Ia 
  Tp57577_TGAC_v2_mRNA37123 119 RKGWTKEEDMQLQAAVEKWGEGNWADIAG 147
                                667************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.357114162IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-9115156IPR009057Homeodomain-like
SuperFamilySSF466896.46E-9117160IPR009057Homeodomain-like
PfamPF002493.0E-7119147IPR001005SANT/Myb domain
CDDcd116601.73E-9122161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
SDLECEKETL PSIPKQTALQ AAACVQVMIS SVPMSECNPT SATIEAPLTI NVPTLTPSSH  60
ASCSTSSQPF NNLIQKPNIV FPVIVERQTR LNNVSSTTKY VQNNGLVGHN VTSNIQRKRK  120
GWTKEEDMQL QAAVEKWGEG NWADIAGRDD FTIDKTAAQL SK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA37123
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490489.34e-68telomeric repeat-binding factor 2-like isoform X2
TrEMBLA0A2K3MXH61e-74A0A2K3MXH6_TRIPR; DNA binding protein
STRINGXP_004490489.11e-67(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-25MYB_related family protein