PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA37250

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 81aa MW: 9565.16 Da PI: 9.9206

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA37250	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	35.8	1.1e-11	16	64	265	315
GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315 s+lfd+l++++ r+ er+k+E ll ++i+n++aceg + +erhe++ W Tp57577_TGAC_v2_mRNA37250 16 SSLFDCLDSTAMRTFVERQKLESILLWKQIKNIIACEGGDVKERHEKV--W 64 79********************************************64..4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	3.8E-9	16	64	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MISISYRVLI DNWELSSLFD CLDSTAMRTF VERQKLESIL LWKQIKNIIA CEGGDVKERH 60 EKVWKSIRRL FSVSAWSFRR *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA37250

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007149009.1	5e-19	hypothetical protein PHAVU_005G032900g
TrEMBL	A0A371DYV1	2e-18	A0A371DYV1_MUCPR; Scarecrow-like protein 3 (Fragment)
STRING	XP_007149009.1	2e-18	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	6e-13	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA37250