PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA37271

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 186aa MW: 21116.8 Da PI: 4.2844

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA37271	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.7	5.4e-25	86	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 +fY+ YA++ GFs+rksk ++ +ge ++tfvCs eg+re++ + ++++r++r etr+gC+ak++v+ ++ +g+w+vt ++ Tp57577_TGAC_v2_mRNA37271 86 QFYCWYARMNGFSIRKSKVGRN-SKGEKLQQTFVCSSEGYREDKGLNtESQKREPRRETRCGCEAKFRVHINTlSGRWYVTIFS 168 6***************9999.67779***********998856788889************************* PP FAR1 83 leHnHela 90 +HnH+l Tp57577_TGAC_v2_mRNA37271 169 DKHNHNLL 176 ***996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-23	86	176	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
YEDEHEGNGD EDGSGDDSGG EYRDPSGDGD GDGSEYSSSE ESDENNSTED EITINSLTDI 60 LKIDMKNISI DDVSMYDFCD LEVAYQFYCW YARMNGFSIR KSKVGRNSKG EKLQQTFVCS 120 SEGYREDKGL NTESQKREPR RETRCGCEAK FRVHINTLSG RWYVTIFSDK HNHNLLEEKY 180 CSLLP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA37271

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024630796.1	3e-49	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2Z6PEJ1	4e-56	A0A2Z6PEJ1_TRISU; Uncharacterized protein
STRING	GLYMA10G23966.1	6e-39	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3290	7	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	8e-16	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA37271