PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3736
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 267aa    MW: 31617.2 Da    PI: 10.5322
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3736genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.46.9e-54361871128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........................kvkaeekewy 59 
                               lppGfrFhPtdeelv +yL++k++g+ +el ++i+evd+yk+ePwdLp                            + +++ ewy
  Tp57577_TGAC_v2_mRNA3736  36 LPPGFRFHPTDEELVAYYLERKITGRIIEL-DIIAEVDLYKCEPWDLPGtfhtirynhliscihiyikvlnfkksFLPSKDMEWY 119
                               79***************************9.99***************5589*********999998888665443334888*** PP

                       NAM  60 fFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               f+s+rd+ky++g+r+nrat+ gyWkatgkd++v s ++++vg+kktLv+ykgrap+g +t+Wvmheyrl
  Tp57577_TGAC_v2_mRNA3736 120 FYSPRDRKYPNGSRTNRATRGGYWKATGKDRAVNS-QKRQVGMKKTLVYYKGRAPHGIRTNWVMHEYRL 187
                               **********************************9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-5425194IPR003441NAC domain
PROSITE profilePS5100553.15736204IPR003441NAC domain
PfamPF023655.7E-2937187IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MFISLSPYFQ SLSLSLSLSL SLIFIKSVIA MAPMTLPPGF RFHPTDEELV AYYLERKITG  60
RIIELDIIAE VDLYKCEPWD LPGTFHTIRY NHLISCIHIY IKVLNFKKSF LPSKDMEWYF  120
YSPRDRKYPN GSRTNRATRG GYWKATGKDR AVNSQKRQVG MKKTLVYYKG RAPHGIRTNW  180
VMHEYRLIES HPGASLSSLK VYHDFIFLCI FHFFKDKYYY PLSPKNVPLM LRIIFRIPTR  240
CVEFSKRQFK SQQKIMRNML KKQRRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-51301879140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3736
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494921e-126AC149492.14 Medicago truncatula clone mth2-99d10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595952.19e-99NAC domain-containing protein 96
SwissprotA4VCM02e-74NAC45_ARATH; NAC domain-containing protein 45
TrEMBLG7IGW32e-97G7IGW3_MEDTR; NAC transcription factor-like protein
STRINGAES662033e-98(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105083341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.12e-76NAC domain containing protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]