PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3739
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 401aa    MW: 46766.3 Da    PI: 7.7201
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3739genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.87.4e-52101581128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....................kvka.eekewyfFsk 63 
                               +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++++ePwdL+                      ++ +  ++ewyfFs+
  Tp57577_TGAC_v2_mRNA3739  10 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNRLEPWDLKGttllqiiilmltlttlvsykcRIGSgPQNEWYFFSH 93 
                               69****************************.9***************945899*******999998887644443556******* PP

                       NAM  64 rdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               +dkky+tg+r+nrat++g+Wkatg+dk++++++++ +g++ktLvfy+grap+g+ktdW+mheyrl
  Tp57577_TGAC_v2_mRNA3739  94 KDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGHKTDWIMHEYRL 158
                               ***************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-515168IPR003441NAC domain
PROSITE profilePS5100552.76110219IPR003441NAC domain
PfamPF023651.7E-2711158IPR003441NAC domain
SuperFamilySSF1019412.75E-51207219IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MMQGSGELTV PPGFRFHPTD EELLYYYLRK KVSYEAIDLD VIREVDLNRL EPWDLKGTTL  60
LQIIILMLTL TTLVSYKCRI GSGPQNEWYF FSHKDKKYPT GTRTNRATTA GFWKATGRDK  120
AIYHTNSKRI GMRKTLVFYT GRAPHGHKTD WIMHEYRLDD DDTAEVQVRK SLCINFYFLV  180
YFFIFLICIK YVIYHLSISL LFIFIFQEDG WVVCRVFKKK NTTRGYQQEI EEEDHIINHM  240
RSTNNQNHFL EPKHQHHHHM QQLGLYDYNN NTTFDGTIHL PQLFSPESSA LAPPPPPPPT  300
SFHNSSMDIL ECSQNLLRLT TTTPNLMQQH QGERLNINGG DWSFLDKLLA SHNGMDHNLR  360
NKLCNTSNNH QAXXXXXXXX XXXXXXXXFC SEISISLPWL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-41715814142NO APICAL MERISTEM PROTEIN
1ut4_B8e-41715814142NO APICAL MERISTEM PROTEIN
1ut7_A8e-41715814142NO APICAL MERISTEM PROTEIN
1ut7_B8e-41715814142NO APICAL MERISTEM PROTEIN
3swm_A1e-40715817145NAC domain-containing protein 19
3swm_B1e-40715817145NAC domain-containing protein 19
3swm_C1e-40715817145NAC domain-containing protein 19
3swm_D1e-40715817145NAC domain-containing protein 19
3swp_A1e-40715817145NAC domain-containing protein 19
3swp_B1e-40715817145NAC domain-containing protein 19
3swp_C1e-40715817145NAC domain-containing protein 19
3swp_D1e-40715817145NAC domain-containing protein 19
3ulx_A1e-4041589140Stress-induced transcription factor NAC1
4dul_A8e-41715814142NAC domain-containing protein 19
4dul_B8e-41715814142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3739
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1558841e-125AC155884.2 Medicago truncatula chromosome 2 clone mth2-10d10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595868.10.0protein SOMBRERO
RefseqXP_024631514.10.0protein SOMBRERO
RefseqXP_024631515.10.0protein SOMBRERO
SwissprotQ9MA179e-98SMB_ARATH; Protein SOMBRERO
TrEMBLA2Q3I90.0A2Q3I9_MEDTR; NAC transcription factor-like protein
STRINGAES661190.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72043447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.33e-86NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]