PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA37526

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 210aa MW: 24784.3 Da PI: 9.9405

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA37526	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.9	9.2e-20	9	116	1	90
FAR1 1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklk 67 +fY +YA+++GFs+r ++k+ k++++i ++vC+keg+++++ + + ++ ++r+e+r+gCka + Tp57577_TGAC_v2_mRNA37526 9 DFYGQYAYKTGFSTRSMLKSKNnsknKKSDKIHYLRYVCNKEGFKKKSLLNpnnkprsdspiviEFEKVKERPEERIGCKAGIY 92 6**********997544444344499999************99999999***99999999********** PP FAR1 68 vkkek.dgkwevtkleleHnHela 90 +k+++ +++++++ e H H+l Tp57577_TGAC_v2_mRNA37526 93 LKLDEtLNVYKIYRWEGTHCHQLH 116 9999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-16	9	116	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
FHSIKEVEDF YGQYAYKTGF STRSMLKSKN NSKNKKSDKI HYLRYVCNKE GFKKKSLLNP 60 NNKPRSDSPI VIEFEKVKER PEERIGCKAG IYLKLDETLN VYKIYRWEGT HCHQLHRKEH 120 HRYLRSFQEV NEVQGQLALI NSKAGMSMRT SYEAMGQGVG GTENLPFRFS DLKNYLMTIR 180 SKEMIRGETT VIQEFFRNEA MSKPSFYYDM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA37526

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013441754.1	1e-131	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024632961.1	1e-126	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	G7I8T1	1e-132	G7I8T1_MEDTR; FAR1 DNA-binding domain protein
STRING	AES61431	1e-132	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14214	2	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-11	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA37526