PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA37588

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

EIL

Protein Properties

Length: 118aa MW: 13914.2 Da PI: 9.1252

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA37588	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	93	6.6e-29	1	96	164	253
TTT--HHHH---S--HHHHHHT--TT--...-----GGG--HH....HHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SH CS EIN3 164 lekgvepPWWPtGkelwwgelglskdqg..tppykkphdlkka....wkvsvLtavikhmsptieeirelerqskylqdkmsak 241 lekg +pP WPtGke ww+e+g+s+dq +ppykkp dlkka wkv v a ikhms +ie+i++ +r+sk lqdk +ak Tp57577_TGAC_v2_mRNA37588 1 LEKGDQPPLWPTGKEIWWNEMGISEDQDlgPPPYKKPLDLKKAwkkaWKVCVWMAIIKHMSTDIEKIKNIVRNSKTLQDKHTAK 84 79***********************999******875222278******************************* PP HHHHHHHHHTTT CS EIN3 242 esfallsvlnqe 253 e+ ++ v+n+ Tp57577_TGAC_v2_mRNA37588 85 ETTNWIVVINHM 96 ****999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	8.1E-28	1	95	No hit	No description
SuperFamily	SSF116768	1.24E-25	1	95	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
Gene3D	G3DSA:1.10.3180.10	7.0E-30	1	96	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
LEKGDQPPLW PTGKEIWWNE MGISEDQDLG PPPYKKPLDL KKAWKKAWKV CVWMAIIKHM 60 STDIEKIKNI VRNSKTLQDK HTAKETTNWI VVINHMDCGF LRAREKNFEF EVVYGYVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	6e-30	1	95	34	122	Protein ETHYLENE INSENSITIVE 3
4zds_B	6e-30	1	95	34	122	Protein ETHYLENE INSENSITIVE 3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator in the ethylene response pathway (PubMed:19798512). Involved in wound signaling by binding specifically to the DNA sequence 5'-ATGTACCT-3' found in the promoter of some wound-inducible genes (PubMed:19798512). Binds directly to the DNA sequence 5'-TGTTACAAATACC-3' in the promoter of the GA20OX2 gene to activate its expression at the transcriptional level during ethylene signaling (PubMed:30002253). {ECO:0000269\|PubMed:19798512, ECO:0000269\|PubMed:30002253}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA37588

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding. {ECO:0000269\|PubMed:19798512}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198090.1	6e-32	ETHYLENE INSENSITIVE 3-like 1 protein
Swissprot	Q8W3M0	1e-32	EIL1B_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 1b
TrEMBL	A0A2K3MD68	2e-32	A0A2K3MD68_TRIPR; Ethylene insensitive 3-like protein (Fragment)
STRING	TRIUR3_26675-P1	1e-31	(Triticum urartu)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20770.1	2e-20	EIL family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA37588

Publications ? help Back to Top
Kuroha T, et al. Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding. Science, 2018. 361(6398): p. 181-186 [PMID:30002253]