PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA37596

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 208aa MW: 23566.6 Da PI: 3.914

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA37596	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.3	1.6e-15	132	200	1	69
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvk 69 +fY +Y+k+ GFsvrks+ ks +ge ++tf Cs g+re++ + ++++rr+r etr+gC ak++v+ Tp57577_TGAC_v2_mRNA37596 132 QFYTTYSKMNGFSVRKSSVVKS-SKGELLQQTFICSSAGYRENKGLNvDNRKRRERCETRCGCAAKFRVH 200 6*****************99.7788************99997889999**********9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-13	132	200	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MSMNEQVEET TYYSEGSCEV ELEGSCEDSD GVENEDNNRQ EDPEHINEDV DESEDGDDSS 60 EENFLEQNSE IGDDNCGDYV DSCXXXXXXX XXXXEEEIVI DDLDDILKID MKNIVSNDVS 120 RYSFSNLEVA YQFYTTYSKM NGFSVRKSSV VKSSKGELLQ QTFICSSAGY RENKGLNVDN 180 RKRRERCETR CGCAAKFRVH IDIASASG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA37596

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024634529.1	1e-37	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2Z6PEJ1	5e-38	A0A2Z6PEJ1_TRISU; Uncharacterized protein
STRING	GLYMA10G23966.1	8e-27	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3290	7	52

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA37596