PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA37615

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MIKC_MADS

Protein Properties

Length: 159aa MW: 18255.8 Da PI: 6.9366

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA37615	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.6	6.8e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skR+ngilKKA+E+S+LCd +v++i+ +++gk++ey+s Tp57577_TGAC_v2_mRNA37615 9 KRIENSSNRQVTYSKRKNGILKKAKEISILCDSQVSLILSGESGKIHEYIS 59 79***********************************************86 PP
2	K-box	19.9	3.1e-08	71	104	1	34
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqre 34 yq+++gk l++a++esl++e++++kke+en++ e Tp57577_TGAC_v2_mRNA37615 71 YQRATGKTLWNAEHESLSNEIDRIKKENENMEIE 104 78899999***********************977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.632	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-33	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-32	2	96	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.88E-33	2	80	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-25	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.3E-21	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MGRGKFELKR IENSSNRQVT YSKRKNGILK KAKEISILCD SQVSLILSGE SGKIHEYISP 60 STTLIDVLDR YQRATGKTLW NAEHESLSNE IDRIKKENEN MEIELSVRDK KMEVYRMVKR 120 NGEILEEQNK ELDLLLQQHM AVEDGETCMH QIISNSVC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-16	1	89	1	81	MEF2C
5f28_B	1e-16	1	89	1	81	MEF2C
5f28_C	1e-16	1	89	1	81	MEF2C
5f28_D	1e-16	1	89	1	81	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269\|PubMed:23181568, ECO:0000269\|Ref.1, ECO:0000305\|PubMed:17920788}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA37615

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT143483	1e-99	BT143483.1 Medicago truncatula clone JCVI-FLMt-11O19 unknown mRNA.
GenBank	BT149416	1e-99	BT149416.1 Medicago truncatula clone JCVI-FLMt-9L14 unknown mRNA.
GenBank	FJ403468	1e-99	FJ403468.1 Medicago truncatula PISTILLATA mRNA, complete cds.
GenBank	KJ470631	1e-99	KJ470631.1 Medicago sativa PISTILLATA (PI) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013461314.2	7e-78	floral homeotic protein PMADS 2
Swissprot	Q0HA25	7e-63	MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBL	A0A2K3P532	1e-105	A0A2K3P532_TRIPR; PISTILLATA protein
STRING	XP_004502537.1	9e-77	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4355	32	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	4e-47	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA37615

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]