PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA37655

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 191aa MW: 21690.1 Da PI: 6.7165

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA37655	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00041	133	159	5	31
HHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 5 hnerErrRRdriNsafeeLrellPkas 31 + ++Er+RR ++ + f eL +P + Tp57577_TGAC_v2_mRNA37655 133 KIMVERKRRLELAHMFIELSATIPRLK 159 6799********************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.1E-4	131	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.45E-5	132	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MEQSWEDIWH LHTEMDIENW LEMCQEEDHL GDYMVHQLSL EAPAMAGAAT ENTLQEICHI 60 PTVVSSEMTK QLPHPSTSSK TCTISFDNSA VIPLKPSVIS SKPPRPPCSA KKRTSEKLKS 120 SEAKAITKEG EKKIMVERKR RLELAHMFIE LSATIPRLKK VIHTINFNKL YLLDLSFDLI 180 FSKQILLEAY *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	141	ERKRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA37655

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024631427.1	1e-35	uncharacterized protein LOC11433586 isoform X3
TrEMBL	A0A2K3P9K1	8e-95	A0A2K3P9K1_TRIPR; Uncharacterized protein
STRING	AES68218	3e-23	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18975	2	5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA37655