PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA377
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 166aa    MW: 19302.1 Da    PI: 10.3567
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA377genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000476080121
                             EEETTTTEEESSHHHHHHHHH CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
                             y C  C + F+++  L+ H+r
  Tp57577_TGAC_v2_mRNA377 60 YLCRVCERAFTSNRALNGHMR 80
                             56******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-85686No hitNo description
Gene3DG3DSA:3.30.160.602.5E-85783IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.4046087IPR007087Zinc finger, C2H2
SMARTSM003550.00896082IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-66084IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
HHLDDLQTDK KKTFNSAKAH TISKPVLQPP QTNGQNRILK ITFFSSSVRN KEKQQQEKPY  60
LCRVCERAFT SNRALNGHMR CHSSKKGTSP FLTCQDAIDL SRFLPSKTYK TNKRSKRFVI  120
DDDVREARDA YYSGEPLILD DMFDRVELKL RWFGSKSVVK YPRCSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA377
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-