PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA37789

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 129aa MW: 14704.3 Da PI: 7.5026

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA37789	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.9	7.6e-14	56	123	2	65
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkak 65 fY++YA+ vGFsv s ++k rng ++++vCskeg+ +++k+ + + r+r+ tr+gCk k Tp57577_TGAC_v2_mRNA37789 56 FYQNYAHAVGFSVLASLETKD-RNGVKHWKHYVCSKEGYLPNKTKDkeqsePNIKTRRRSLTRVGCKEK 123 ************9988887.9999********98777777445444556669999***966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.2E-12	56	124	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MEELQSPDPK FASYHNSESS RSPVHSENEC VPNDRDDDLK PKVGQIFDTL EECQTFYQNY 60 AHAVGFSVLA SLETKDRNGV KHWKHYVCSK EGYLPNKTKD KEQSEPNIKT RRRSLTRVGC 120 KEKLLSNG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA37789

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024634877.1	3e-34	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A072U9Z0	3e-35	A0A072U9Z0_MEDTR; FAR1 DNA-binding domain protein
STRING	AES89813	5e-33	(Medicago truncatula)
STRING	AES98791	1e-32	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15907	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-10	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA37789