PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA37892
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 1511aa    MW: 165494 Da    PI: 6.4454
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA37892genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.9e-10702743346
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                +WT+eE+e++++ ++ +G++ +++Ia  ++ ++t  +c+++++k
  Tp57577_TGAC_v2_mRNA37892 702 PWTAEEQEIFLEKFAAYGKD-FRKIATFLN-HKTTADCVEFYYK 743
                                8*****************99.*********.***********98 PP
2Myb_DNA-binding262.1e-08920960446
                                S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                W+  E   +++av ++G++ ++ Ia+++  +R+ +qck ++ k
  Tp57577_TGAC_v2_mRNA37892 920 WSDVEKAAFLHAVSLFGKD-FAMIAQRVR-TRSQYQCKVFFSK 960
                                *****************99.*********.********88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.64E-14691746IPR009057Homeodomain-like
PROSITE profilePS5129316.556698749IPR017884SANT domain
SMARTSM007171.3E-10699747IPR001005SANT/Myb domain
PfamPF002494.0E-8701743IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-6702743IPR009057Homeodomain-like
PROSITE profilePS5129312.501915966IPR017884SANT domain
SMARTSM007176.1E-7916964IPR001005SANT/Myb domain
SuperFamilySSF466894.06E-9918966IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-5919964IPR009057Homeodomain-like
PfamPF002493.3E-6919958IPR001005SANT/Myb domain
CDDcd001676.88E-5920958No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1511 aa     Download sequence    Send to blast
MSLEPLDRKS SFRERKRHES SESFGSVARW RGSSNYNRSR EFNRGGDYRR VGGHRKQGSW  60
QLFPEESGHR HMISRSCDRR LEEDNYRPSF SRGDGNYGRG NKESRGAFSQ REWRGRSSET  120
TNNSLNMSRR QTNASNDRKS VDDMLTYSSH SHSDLVNTWE QHNMKDQHDK MGGVNRFVTG  180
QRNDRDSSLG TIDWKPLKWT RPGCSTSRDS GFSRSSGMRS LGGTNSKGSC EWKVGLQQKI  240
ATAVESNSGE AATCRASSAP SEEENLRKKP RLNWGEGLAK FERKHVEGPE VTSNNDDPVS  300
PPFSMETNNF LSTGLVDRSP KVSGLSECAS PVTPSSAARS SSPGADDKLF GKAANVDSDV  360
GNLSSSPVPG SQNHLQMFSF NLEKVDIDSL ISLGSPLVEL LPQSDNLNSV DYSLLISTTM  420
DKLLILKADI SKVLEVTETE IDLLENELRS LKSESKDRFQ CSEEAVGSLL IPCTYRHVAN  480
VSACGDSNSS LEVKDSVDVK SSASTGDILY NTIISCNEKT AKAACEVFDK LLPEKCCKNE  540
NIGASSGSSS HNGTLIKEKF AERRRLARLK ERIITLKFKA LHHLWKEDMR LLSIRKHRPK  600
SHKKLESELR TTSNSHQKKR SSIPFRFPFP AGNQLKLVPT SEMIKYTSQL LSESKHEIHR  660
STLKMPALIW DQKDKMYSMF SSSNGLVVDP VAIEKERAMI NPWTAEEQEI FLEKFAAYGK  720
DFRKIATFLN HKTTADCVEF YYKNHKSDCF EKIKKRDDDK LGKFFKAKTD LMASGVKCNS  780
GVNASSLDIL SEASSVMADD IARDRKMRSG SSLWRGYNNH NKSRGDNIIT ERPDSFDVLQ  840
DERETVAADV LASICGCVLS EATSSCITSS VDPVKGKRVV KKCVKVKPLS KKPPMPEITQ  900
NIDHETCSDE SCGEMELTDW SDVEKAAFLH AVSLFGKDFA MIAQRVRTRS QYQCKVFFSK  960
TQKRLRLNHM GDRPENVGSQ MNDDVDGGRS DADNACVVET GSANGSDSSG TKTGVDQPES  1020
DKNMYHDESN PVEASNLSAD LYTSEEINRK VDHEDVNMVS NVCVIGGESK LRTDDIVGVL  1080
NGSDRSGSVR EQRAIVMSDG IEIGTNEPIE GGGGAVTELV SGTGTMEPCY SNSVAEGRLV  1140
ADVSSAQQGN KLEGSTICLV DRDEADTDAV IELKGNVRDS STLVNTSLSS VDVSCPRLSV  1200
EAENEPQICL EKPQFSGSSE VPLTDSTTST LQYTDGAAMQ SKKPSSQDLS SCDFQGNQDM  1260
IGHDSSSNLG HQLCNPGKSL DHVEAARVLQ CYNLQAPSEK EVNVKMSCSS SATELPLLSQ  1320
KIDLEEPPRN DVKIFGKILT IPSSTPKPNL SAKGNEENGT HLPKLSSGSS SLKLTGHDNT  1380
GGKSTILNVD LNDCRVFQNV PVIRSYSDGN KIQPVFSSLP DSAILLAKYP AAFGSYGLEA  1440
VSSLQQQVTE MVSSNGIGEP GILAGGSKSV ASDPIAAIKT HQTNADQFVG QTGNAIKDGE  1500
PVGEEKDLNS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C4e-15660751494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D4e-15660751494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267283KKPRLNWGEGLAKFERK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA37892
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489929.10.0uncharacterized protein LOC101505283 isoform X1
RefseqXP_004489930.10.0uncharacterized protein LOC101505283 isoform X1
TrEMBLA0A2K3NLR70.0A0A2K3NLR7_TRIPR; Nuclear receptor corepressor
STRINGXP_004489929.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-85MYB family protein