PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA37902
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 240aa    MW: 27080.2 Da    PI: 4.5232
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA37902genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix104.86.2e-3362147187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW+k ev aLi++r+ ++ +++++  k+plWee+s+ m+  g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+q
  Tp57577_TGAC_v2_mRNA37902  62 RWPKTEVEALIKLRTTLDMKYQENGPKGPLWEEISSLMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQ 144
                                8*********************************************************************8.99********** PP

                   trihelix  85 lea 87 
                                l+a
  Tp57577_TGAC_v2_mRNA37902 145 LDA 147
                                *85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.2E-559121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-560118IPR009057Homeodomain-like
SuperFamilySSF466892.91E-561121IPR009057Homeodomain-like
CDDcd122033.63E-2861126No hitNo description
PROSITE profilePS500907.44561119IPR017877Myb-like domain
PfamPF138374.0E-2361148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MATPQVQTPA PLPIPIPAPV IPQVSPLPQQ QAQVQQQQVT NMEIVKSDNN GGESVMQASS  60
SRWPKTEVEA LIKLRTTLDM KYQENGPKGP LWEEISSLMK NLGYNRNAKR CKEKWENINK  120
YFKKVKESNK KRPEDSKTCP YFHQLDALYR EKNKGEGAAV VRPEGTMMAP LMVQPEQQWP  180
PQQPPPTTGA DVTMEDAEKD RPHHDEEAFY DDDDGDDEEE EDEGSDNYEV VANKPPPPQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA37902
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451833.13e-93trihelix transcription factor GTL1
SwissprotQ391173e-52TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2K3PI531e-172A0A2K3PI53_TRIPR; Trihelix transcription factor GT-2-like protein
STRINGAES850681e-92(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-60Trihelix family protein