PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3793
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 139aa    MW: 15274.5 Da    PI: 9.0656
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3793genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001194116123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               + C +Cgk+F++   L  H  +H
  Tp57577_TGAC_v2_mRNA3793  94 FNCDKCGKMFRSYQALGGHKAKH 116
                               78***********9999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.71729IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182734IPR007087Zinc finger, C2H2
SuperFamilySSF576675.3E-9829No hitNo description
PfamPF139126.4E-5929IPR007087Zinc finger, C2H2
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
SuperFamilySSF576675.3E-989116No hitNo description
PfamPF139125.1E-1293118IPR007087Zinc finger, C2H2
SMARTSM003550.06194116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15794121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MEKNNGKACG ICGKWFPSAK SIGGHMRSHL VLLPIPPKFE ANNQAMDNPI HHPNQRASPL  60
DCLSPENAAK TLIMMSKETV KGDSLAQVNS QARFNCDKCG KMFRSYQALG GHKAKHRKID  120
PDLLADTVDT LERSEFKD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3793
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636235.19e-20zinc finger protein ZAT4-like
TrEMBLA0A2K3PMW03e-99A0A2K3PMW0_TRIPR; Zinc finger family protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1538968
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.16e-11C2H2-like zinc finger protein