PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA37953

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Protein Properties

Length: 878aa MW: 97019.4 Da PI: 7.7633

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA37953	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.8	9.5e-19	308	407	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 f+k+l+ sd+++ grlvlpkk+ae++ ++++e++ l++ d +g++W +++++ +++s++yvl+ G ++ +L++gD+v Tp57577_TGAC_v2_mRNA37953 308 FQKTLSASDAGRIGRLVLPKKCAETYfpPISQPEGVPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTV 390 99************************667778999***********99899999999.************** PP EEEE-SSSEE..EEEEE- CS B3 81 vFkldgrsefelvvkvfr 98 +F++ + e++lv+++++ Tp57577_TGAC_v2_mRNA37953 391 TFSRLE-PEGRLVMGFRK 407 *766.66667777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.5E-30	305	411	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.88E-20	305	410	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.75E-22	306	407	No hit	No description
Pfam	PF02362	8.7E-16	308	407	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-20	308	408	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.138	308	409	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.065	556	606	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.1E-11	561	603	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence Send to blast
MLLHYSIDKT VIGGNCSAFE EGRFCDIFHA NTSGWRNCET CRKRIHCGCI VSSNTFVLLD 60 PGGIECFTCA RKSIILPSNL AWPQSLSFQN RLSERYRDIS AKSWSQLAGS GPVPWKQAPS 120 LFNSASSSDQ PADVHSLGEL SNNFDKTYGN ERLPTSSLEK KNEDLSGISA NWNAKFGSRE 180 MVLMNGLRSE DKSGPCLNMC QQPHSLKEES SSQPFGLSVP YSSPNERNGQ IGVTGIHPQQ 240 TPPHPGNHFS STVQLALDPS GEAQVRNGRP RADARGRSQL LPRYWPRCTD LELQQISIDS 300 NSVITPLFQK TLSASDAGRI GRLVLPKKCA ETYFPPISQP EGVPLKILDA KGKEWIFQFR 360 FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV TFSRLEPEGR LVMGFRKATN AMPPPDQDNE 420 ASKTGNGLSA QEVELTDPSS WSKVDKSGYI AKEAPGSKSL ISRKRKSNIL GSKSKRLKMG 480 NEDIIELKIT WQEAQGLLRP PPNHVPSIVV IXXXXXXXXX XXXXXXXXXX LWNSSTLNPL 540 DSPVLGKPTI FTTDNMGEKI QWSQCEDCLK WRKLPASALL PSKWTCSDNS WDPERSSCSA 600 AQELTAEQLE NLLPPYNSVS KKMKAAKQDP DHAEALEGLD TLANLAILGE GDALQASSQA 660 TTKHPRHRPG CSCIVCIQPP SGKGPKHKQT CTCNVCLTVK RRFRTLMLRR EKKQSEREAE 720 TTRKKIQQQN SQQLPSPEIL LDDDSLHNSN TGDSSPNMNK EGNDCSDDDP HRIKSSVSPF 780 KGQIDLNIQP EREEELSPGS DSGGVMKLLH DATEMYLKQQ QQQQQKTVLN SGTGDSSGSQ 840 SQQVDVVREE KLSNGVIHGS SSHNADKEPV QSLYMNV*

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence Send to blast

MLLHYSIDKT VIGGNCSAFE EGRFCDIFHA NTSGWRNCET CRKRIHCGCI VSSNTFVLLD  60
PGGIECFTCA RKSIILPSNL AWPQSLSFQN RLSERYRDIS AKSWSQLAGS GPVPWKQAPS  120
LFNSASSSDQ PADVHSLGEL SNNFDKTYGN ERLPTSSLEK KNEDLSGISA NWNAKFGSRE  180
MVLMNGLRSE DKSGPCLNMC QQPHSLKEES SSQPFGLSVP YSSPNERNGQ IGVTGIHPQQ  240
TPPHPGNHFS STVQLALDPS GEAQVRNGRP RADARGRSQL LPRYWPRCTD LELQQISIDS  300
NSVITPLFQK TLSASDAGRI GRLVLPKKCA ETYFPPISQP EGVPLKILDA KGKEWIFQFR  360
FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV TFSRLEPEGR LVMGFRKATN AMPPPDQDNE  420
ASKTGNGLSA QEVELTDPSS WSKVDKSGYI AKEAPGSKSL ISRKRKSNIL GSKSKRLKMG  480
NEDIIELKIT WQEAQGLLRP PPNHVPSIVV IXXXXXXXXX XXXXXXXXXX LWNSSTLNPL  540
DSPVLGKPTI FTTDNMGEKI QWSQCEDCLK WRKLPASALL PSKWTCSDNS WDPERSSCSA  600
AQELTAEQLE NLLPPYNSVS KKMKAAKQDP DHAEALEGLD TLANLAILGE GDALQASSQA  660
TTKHPRHRPG CSCIVCIQPP SGKGPKHKQT CTCNVCLTVK RRFRTLMLRR EKKQSEREAE  720
TTRKKIQQQN SQQLPSPEIL LDDDSLHNSN TGDSSPNMNK EGNDCSDDDP HRIKSSVSPF  780
KGQIDLNIQP EREEELSPGS DSGGVMKLLH DATEMYLKQQ QQQQQKTVLN SGTGDSSGSQ  840
SQQVDVVREE KLSNGVIHGS SSHNADKEPV QSLYMNV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	8e-63	286	411	2	127	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	461	466	SRKRKS
2	463	477	KRKSNILGSKSKRLK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA37953

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003593434.2	0.0	B3 domain-containing protein Os07g0563300 isoform X2
Swissprot	Q0D5G4	0.0	Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBL	A0A396J3B3	0.0	A0A396J3B3_MEDTR; Putative transcription factor & chromatin remodeling CW-Zn-B3/VAL family
STRING	AES63685	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7738	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-151	HSI2-like 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA37953