PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3802
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 280aa    MW: 30887.5 Da    PI: 7.8047
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3802genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-19128182256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ ++tk+q   Lee F+++++++ ++++ LA++l+Lt rqV vWFqNrRa+ k
  Tp57577_TGAC_v2_mRNA3802 128 RKKLRLTKDQSAMLEESFKQHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTK 182
                               788899***********************************************98 PP
2HD-ZIP_I/II127.36.6e-41128217191
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk+rl+k+q+++LEesF+++++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+kev+
  Tp57577_TGAC_v2_mRNA3802 128 RKKLRLTKDQSAMLEESFKQHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQ 212
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreel 91 
                               eL+ +l
  Tp57577_TGAC_v2_mRNA3802 213 ELK-AL 217
                               **9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-19114178IPR009057Homeodomain-like
SuperFamilySSF466897.52E-19122185IPR009057Homeodomain-like
PROSITE profilePS5007117.767124184IPR001356Homeobox domain
SMARTSM003891.8E-17126188IPR001356Homeobox domain
CDDcd000862.62E-17128185No hitNo description
PfamPF000463.7E-17128182IPR001356Homeobox domain
PROSITE patternPS000270159182IPR017970Homeobox, conserved site
PfamPF021831.1E-10184218IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.5E-26184227IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGLNNQDASN NPSLQLILGL ALTLTKQDTP PSSNNVVTKP YSSSNNNNYE TEPSLTLGLS  60
TKSYYEEPLE FSTQTNSPHH SVVSASFSSG RVKRERDVSS ELEMETTEIE RVSSRISDED  120
EDGATAARKK LRLTKDQSAM LEESFKQHST LNPKQKQALA RELNLTPRQV EVWFQNRRAR  180
TKLKQTEVDC EFLKKCCETL TDENRRLQKE VQELKALKLA QPLYMPMPAA TLSMCPSCER  240
LGGGGGGGGV NGGSSNKNNF SMAPKPHFYN PFTNSSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176184RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3802
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457515.11e-156homeobox-leucine zipper protein HAT22
SwissprotP466042e-91HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2K3PME30.0A0A2K3PME3_TRIPR; Homeobox-leucine zipper protein HAT22-like
STRINGXP_004509044.11e-137(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.16e-91HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]