PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3838
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 175aa    MW: 20764.4 Da    PI: 10.2046
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3838genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1292.4e-0975120550
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                               ++ rr+++NRe+ArrsR RK+  +e+L++   +   eN+++k++l+
  Tp57577_TGAC_v2_mRNA3838  75 RKRRRMISNRESARRSRMRKQRHVENLRNQLNKCRLENREMKNRLQ 120
                               5789**************************************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-1071135IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-773120No hitNo description
PROSITE profilePS5021710.01373136IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.09E-975122No hitNo description
CDDcd147023.23E-1676123No hitNo description
PROSITE patternPS0003607893IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MLSTLPPSDP FLDNPFSAFS GSFPPWDFHD LFSDDIKPTT PLLITSSSGS DEPNQPHEKR  60
KPDSDEPNHR VIDERKRRRM ISNRESARRS RMRKQRHVEN LRNQLNKCRL ENREMKNRLQ  120
FILFHLNRIR TENDWLRSER TVLNQRINNY TQILVCQQFQ PFTPAWTCNT TTVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15878KRKPDSDEPNHRVIDERKRRR
27478RKRRR
38794RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3838
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608557.11e-115basic leucine zipper 4
TrEMBLA0A2K3MUM41e-124A0A2K3MUM4_TRIPR; Ocs element-binding factor 1-like protein
STRINGAES907541e-114(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54353254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.29e-32basic leucine-zipper 6