PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA38522

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C3H

Protein Properties

Length: 171aa MW: 18737.1 Da PI: 9.0878

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA38522	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.6	6.6e-11	10	34	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt lC f++ GtC +G++C++aHg Tp57577_TGAC_v2_mRNA38522 10 FKTQLCIKFMQ-GTCAHGANCNYAHG 34 69*******.***********9 PP
2	zf-CCCH	23.6	8.8e-08	43	65	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lCr f+ + +C++G++C+F+H+ Tp57577_TGAC_v2_mRNA38522 43 RLCRMFSSNRHCNFGNNCRFIHS 65 89********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.51E-8	8	40	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-12	8	40	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.3E-6	9	35	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.375	9	36	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-8	10	34	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.126	39	67	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.038	41	66	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.3E-7	42	65	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.1E-6	42	66	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.7E-6	43	65	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MEAERYSAKF KTQLCIKFMQ GTCAHGANCN YAHGYSEIRE TPRLCRMFSS NRHCNFGNNC 60 RFIHSTPHHH DSAIINITPQ QHFVNAEQGT VQNAGCRTVQ TAAPPAAINY GSPSAQNKMV 120 QTSTVPATND PASSSTVPTT KLHKNGPYAG ISMFDKTVMQ KVIGKYADWI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA38522

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003597853.1	5e-43	mRNA decay activator protein ZFP36L2
TrEMBL	A0A2Z6M156	2e-95	A0A2Z6M156_TRISU; Uncharacterized protein
STRING	AES68104	2e-42	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15954	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	2e-09	C3H family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA38522