PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38567
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 187aa    MW: 21596.7 Da    PI: 4.2932
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38567genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.42.3e-2691161128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGf F+Ptdeel+ ++L  k++   ++   +i++  + +++Pw+L  k  ++ ++ yfF++         ++nr+t++gyWk
  Tp57577_TGAC_v2_mRNA38567   9 LPPGFYFSPTDEELILHFLYSKASLPYHPN--IIPH--LSQHHPWELYGKSLSSGNQHYFFTEV--------KENRSTENGYWK 80 
                                79********************99888666..6776..899******966667789999*9986........45899******* PP

                        NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                + g +k++ +      g+kk Lvf  g   +g++t+Wvm+ey++
  Tp57577_TGAC_v2_mRNA38567  81 EIGVTKPINN-----LGMKKYLVFILG---EGTETNWVMEEYHI 116
                                ********98.....9*********65...5667********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-336142IPR003441NAC domain
PROSITE profilePS5100530.6339142IPR003441NAC domain
PfamPF023654.6E-2110116IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGSESSVNLP PGFYFSPTDE ELILHFLYSK ASLPYHPNII PHLSQHHPWE LYGKSLSSGN  60
QHYFFTEVKE NRSTENGYWK EIGVTKPINN LGMKKYLVFI LGEGTETNWV MEEYHISSYE  120
SRRSQNQDES WSKWVLCKVY EKNVSQEGAS YSDEDIDDNG TEVSWLDEVF MSLDDDDLDQ  180
TSLPNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-2631439169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38567
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1221642e-73AC122164.6 Medicago truncatula clone mth2-24h4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630281.11e-107NAC domain-containing protein 104
SwissprotQ8GWK62e-50NC104_ARATH; NAC domain-containing protein 104
TrEMBLG7LE351e-106G7LE35_MEDTR; NAC transcription factor-like protein
STRINGAET047571e-107(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.18e-49xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]