PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38710
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 381aa    MW: 42943.6 Da    PI: 5.2428
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38710genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-141465148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                               +g W++eEde+l + ++++G g+W+++++       + R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA38710 14 KGLWSPEEDEKLFNHITRFGVGCWSSVPKQAEissgLQRCGKSCRLRWINYL 65
                               678***********************************************97 PP
2Myb_DNA-binding41.62.8e-1371126146
                                TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmgkgRtlkqcksrwqk 46 
                                rg ++++E++l++ ++++lG+            +W+ Ia+ ++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA38710  71 RGMFSQQEEDLIISLHELLGNScgmiflsfecnRWAQIAAQLP-GRTDNEIKNFWNS 126
                                788******************9*********************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-24668IPR009057Homeodomain-like
PROSITE profilePS5129421.215969IPR017930Myb domain
SuperFamilySSF466892.63E-2412124IPR009057Homeodomain-like
SMARTSM007171.3E-101367IPR001005SANT/Myb domain
PfamPF002493.5E-121465IPR001005SANT/Myb domain
CDDcd001674.48E-91765No hitNo description
Gene3DG3DSA:1.10.10.605.9E-2369132IPR009057Homeodomain-like
SMARTSM007173.4E-1170130IPR001005SANT/Myb domain
PROSITE profilePS5129413.87670132IPR017930Myb domain
PfamPF002492.9E-1271127IPR001005SANT/Myb domain
CDDcd001677.02E-974125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDEKLFNHIT RFGVGCWSSV PKQAEISSGL QRCGKSCRLR  60
WINYLRPDLK RGMFSQQEED LIISLHELLG NSCGMIFLSF ECNRWAQIAA QLPGRTDNEI  120
KNFWNSCLKK KLMKQGIDPA THKPHTEAYV KEENKTTETI TTTSMQIPSI TSQGSSFLIS  180
DSSYYENNGL SLTEPSREIF NSKSALDLDP LFCYDFQSGY NLPINNYQSQ SQSQSQFGLN  240
SSYGFTSMPS LTNSDHANVS ITEFSDNNSA SKISSLFMND QVKESNSSNS SNMSTIYPSQ  300
MTTTMMENNN AGFSWEGSEN KLDPLFQFQV NAIKSEEFGT SSWEEGHIQT QNSIDFSSYH  360
PLTSLSEDLT EANFDAFHHI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-24713220128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457766.10.0transcription factor MYB86
TrEMBLA0A2K3N6P70.0A0A2K3N6P7_TRIPR; Transcription factor MYB 86-like protein
STRINGXP_004515875.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.37e-75myb domain protein 55