PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38719
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 465aa    MW: 53805 Da    PI: 6.7514
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38719genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.4e-18208254148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +g WT +Ed ll++ v+q+G++ W+ Ia++++ gR +kqc++rw+++l
  Tp57577_TGAC_v2_mRNA38719 208 KGQWTVDEDRLLIQMVEQFGMRKWSHIAQKLP-GRIGKQCRERWHNHL 254
                                799*****************************.*************97 PP
2Myb_DNA-binding56.46.9e-18262302345
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                 WT eEd++l++a+ + G++ W+ Ia++++ gRt++++k++w+
  Tp57577_TGAC_v2_mRNA38719 262 IWTDEEDKILIQAHSEIGNK-WAEIAKRLP-GRTENSIKNHWN 302
                                6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.33203258IPR017930Myb domain
SuperFamilySSF466892.96E-31205301IPR009057Homeodomain-like
SMARTSM007172.8E-17207256IPR001005SANT/Myb domain
PfamPF002495.6E-17208254IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-27209261IPR009057Homeodomain-like
CDDcd001679.26E-16211254No hitNo description
PROSITE profilePS5129420.947259309IPR017930Myb domain
SMARTSM007177.6E-17259307IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-22262307IPR009057Homeodomain-like
CDDcd001673.48E-13263305No hitNo description
PfamPF002492.4E-16263302IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MFPSIPVTLN SLMVLETNLR ENYASQSQPI HLQENYLKPR MKDELIPFGA HSTQGSFLQD  60
FHHIDQFHVH GSSSSNQVFG VQTQNFDPFG NAECANTDFE VYDGKPFGEN NINGSEHAQL  120
IENFQYDGYS LNIPRRNHLD LMVENHSYFP FNNPSETKPL NYVVPDDEVS SIAPTNYYQR  180
AGLNRNNRLL SPTTRRAFKA RKKSNIVKGQ WTVDEDRLLI QMVEQFGMRK WSHIAQKLPG  240
RIGKQCRERW HNHLRPDIKK DIWTDEEDKI LIQAHSEIGN KWAEIAKRLP GRTENSIKNH  300
WNATKRRQYS KRKCRSKYPR GTLLQDYIKS LNLDQNPPRD FRKRSSANAK KTVTCSTSKS  360
ATQQIPQPQI ANQFCPNDRP GPNYEFNDFS LDDNLFEEGC GIDSLLDEMS SVPTTDEKDF  420
EEKQQCDKES MQVNLEEQQF ETQVEIKKEL DLVEMISQVN QSIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-432063082104C-Myb DNA-Binding Domain
1msf_C2e-432063082104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38719
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457808.20.0transcription factor MYB98
TrEMBLA0A2K3PM890.0A0A2K3PM89_TRIPR; Transcription factor MYB 98-like protein
STRINGXP_004508897.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.14e-96myb domain protein 98