PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38790
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 573aa    MW: 63168.8 Da    PI: 4.3669
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38790genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.3e-10236258426
                                ---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                e C+f+++tG Ck+G +C+F+H+
  Tp57577_TGAC_v2_mRNA38790 236 EDCSFYMKTGNCKFGFNCRFNHP 258
                                89********************8 PP
2zf-CCCH29.41.3e-09283306225
                                -S---SGGGGTS--TTTTT-SS-S CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                                ++ +C++++r+G Ck+G  CkF+H
  Tp57577_TGAC_v2_mRNA38790 283 GQTECKYYQRSGGCKFGKACKFNH 306
                                6789******************** PP
3zf-CCCH40.83.7e-13326351126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                +++++C++++rtG Ck+G++C+F+H+
  Tp57577_TGAC_v2_mRNA38790 326 PGERECPYYMRTGSCKFGSNCRFNHP 351
                                5789*********************9 PP
4zf-CCCH29.11.7e-09461487127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                +++++C+ff++tG Ck+ ++CkF+H++
  Tp57577_TGAC_v2_mRNA38790 461 PGEPECSFFLKTGDCKFKSNCKFHHPK 487
                                5799*********************96 PP
5zf-CCCH34.72.9e-11508533227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                +++ C++++r+G+Ck+G+ C+F H++
  Tp57577_TGAC_v2_mRNA38790 508 DQSVCSHYSRYGICKFGPACRFDHPE 533
                                5789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.2E-5232259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54232260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6233260IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-8236258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001238257IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4281308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155281309IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-7283306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-5285308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4287308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.427325353IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-7325352IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-10327351IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6328352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5331350IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4460487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164460488IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-7462487IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5464489IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-5506533IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878506534IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6507536IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8508533IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4511534IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MEHSEIDLAP ISNGEQPQLV SHEDSSSPVV DHSPPSDLNQ KAENHIDHDD ALAVELHDKL  60
DLKIEDERVV ETDDKVSNFN DGGEVCVEEE SVKGEVVVEE EEEEEEDSVK VEAVEEEAES  120
VKGENEEESV KGEVDEEEEE ESVKDAVEEE FVKGEEGFDG DSKGWDTNSW NENVNEELGG  180
GRDADGYGYG DGYGGGYGDG YGYGDGYGYG DVDGVEEKEE KSGDGTHQFP LRPEAEDCSF  240
YMKTGNCKFG FNCRFNHPIR RKNQAVREKV REREREEPAE NPGQTECKYY QRSGGCKFGK  300
ACKFNHTRGF TAPISELNFL GLPIRPGERE CPYYMRTGSC KFGSNCRFNH PDPTTVGGGD  360
PQSGFGNGGS AALRSVSQQS SASWSSSRKL NETPFVPLVI TPTQGLAPQS PDWNGYQAPG  420
YLSERVMHPS STYVMNNPTI ETNVYMHHQK QMPIEVYPER PGEPECSFFL KTGDCKFKSN  480
CKFHHPKNRI ARLPPCILSD KGLPLRPDQS VCSHYSRYGI CKFGPACRFD HPESALPLMM  540
PGLGQQSYGN SDNAQVAGMG GSASDGTIQQ SV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38790
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1478740.0BT147874.1 Medicago truncatula clone JCVI-FLMt-22B17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608904.10.0zinc finger CCCH domain-containing protein 67
SwissprotQ9STM41e-136C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2Z6NGP40.0A0A2Z6NGP4_TRISU; Uncharacterized protein
STRINGAES911010.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-120C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]