PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38905
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 489aa    MW: 56070.2 Da    PI: 9.8448
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38905genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.15e-111652213597
                                EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                         B3  35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                 +tlede+g +++  +   +++ +  l++GW+ F+ +++L++gD +vF+l++ ++f  ++ ++
  Tp57577_TGAC_v2_mRNA38905 165 NMTLEDEDGSEYDAVY--IGSRTG--LSGGWRAFALEHKLDDGDALVFELVEPTRF--KIYIV 221
                                69**************..566544..***********************9876666..66655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-15136222IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-10137222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-18141222No hitNo description
SMARTSM010191.5E-9143224IPR003340B3 DNA binding domain
PfamPF023624.8E-9164221IPR003340B3 DNA binding domain
PROSITE profilePS5086310.32166224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MAKGCSSNNY EEARKKRLEE NKKRIEDLGI SKISKFLTKV TSPAKKSQNR LPRLKLKTNI  60
EVEPRRSSRP RNKVTSYTEE FSTDLPDRSS YLRKRSRSSS SSWESYVARP LDEIKEAIKQ  120
ERIRACEAAE ALQINLQSSK PSFIKSMLRS HVYSCFWLRM KMVYNMTLED EDGSEYDAVY  180
IGSRTGLSGG WRAFALEHKL DDGDALVFEL VEPTRFKIYI VRAFPNIDEE EVEENDTLVK  240
EENMNTSKAT KVSKAASNYG SKSKKTKKQK HVIEMKESDS SEESMPEINI DKESKPQWLN  300
PSRKTRSFRK EVQKKPKSPT TPDSESNEEA KMQTQKKINS PQKKMRKTSE VPTTPEPKEE  360
AQIETVKRKT RSSQKQMQEI SEASTDLESK EEAQVEAVKP KAAAKLSNKT QKSKEDNECE  420
IDESINTEQL LPKDNVVETV DANMSKENEH VQDNDLESMK DKPDEKPSKR ASQVPRKKSA  480
PKFFRKRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38905
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1524982e-51AC152498.11 Medicago truncatula chromosome 8 clone mth2-38m20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490734.11e-172ankyrin repeat domain-containing protein 12-like
RefseqXP_004490735.11e-172ankyrin repeat domain-containing protein 12-like
TrEMBLA0A2K3P8L10.0A0A2K3P8L1_TRIPR; B3 domain-containing protein
STRINGXP_004490734.11e-171(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-47B3 family protein