PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38997
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 304aa    MW: 34504.2 Da    PI: 8.8813
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38997genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.42.5e-30958150
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               krienk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifss+gkl e+ 
  Tp57577_TGAC_v2_mRNA38997  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLSEFG 58
                               79**********************************************95 PP
2K-box25.26.9e-1078123448
                      K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRh.llGedLesLsl 48 
                                s++ + +e+++++++qe++kLk+++e+Lq++q +  +G  L+sL++
  Tp57577_TGAC_v2_mRNA38997  78 SQNDNDNEHETQNWYQEISKLKAKYESLQKSQSNsNKGFRLQSLTI 123
                                4455578899*******************88877258999999987 PP
3K-box63.29.5e-221441963688
                      K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                                R+llGedL++L++keLq+Le+qLe +l + R++K+++++eq+eel+kk ++ q
  Tp57577_TGAC_v2_mRNA38997 144 RQLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRKKVRNSQ 196
                                9************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.2E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.576161IPR002100Transcription factor, MADS-box
CDDcd002657.38E-42280No hitNo description
SuperFamilySSF554552.75E-33292IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.33188232IPR002487Transcription factor, K-box
PfamPF014862.9E-16143196IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009911Biological Processpositive regulation of flower development
GO:0010094Biological Processspecification of carpel identity
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEIALIIFSS RGKLSEFGSS  60
TSGIGKTLER YQRCSYTSQN DNDNEHETQN WYQEISKLKA KYESLQKSQS NSNKGFRLQS  120
LTIEITLGLS LCWVGPNCHV NYFRQLLGED LGPLNIKELQ NLEKQLEGAL AQARQRKTQI  180
MIEQMEELRK KVRNSQVPTN LGILPSSIIY LELHLGEINK QLRFKLESDG FNLKAYESMW  240
NTTNSASVAG GGNFPFQPSE TNPMDCQPEP FLQIGYQNYV QAEQSSAPKN MVGETSFIQG  300
WML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-19171169MEF2C
5f28_B6e-19171169MEF2C
5f28_C6e-19171169MEF2C
5f28_D6e-19171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38997
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1470142e-62AC147014.29 Medicago truncatula clone mth2-164l15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623805.21e-158agamous-like MADS-box protein AGL6
SwissprotQ8LLR11e-118MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLG7L1F41e-157G7L1F4_MEDTR; MADS-box transcription factor
STRINGAES800231e-152(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-99AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]