PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39095
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 157aa    MW: 18064.9 Da    PI: 10.1765
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39095genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.51.7e-131050242
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               +i+++s+r  +++kR+  ++KK  EL +LCd+ ++ +i s+
  Tp57577_TGAC_v2_mRNA39095 10 FISDESKRRASYIKRKRSLIKKVTELTTLCDVPACAVISSP 50
                               8************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-15160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-20182IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.054149IPR002100Transcription factor, MADS-box
CDDcd002665.55E-18285No hitNo description
PRINTSPR004042.8E-5323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-121050IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MARNKVKLAF ISDESKRRAS YIKRKRSLIK KVTELTTLCD VPACAVISSP FDSHIDVWPN  60
LEGAKKVIER YQNSTVINES KNVSHQRFIM QRTAKARDQL KKLKHGNREK ELNLLMFEYL  120
QNNNVSYDLT PEEAKDLDKV VGKMLKEVDN KINTLD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11525KRRASYIKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39095
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496299.11e-73agamous-like MADS-box protein AGL80
TrEMBLA0A2K3MVF01e-110A0A2K3MVF0_TRIPR; Agamous-like mads-box protein agl80-like
STRINGXP_004496299.15e-73(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.18e-31AGAMOUS-like 38