PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39111
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 678aa    MW: 74773.6 Da    PI: 4.2104
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39111genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.98.6e-325814542128
                        NAM  42 vePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvm 123
                                +ePwdLp  +k+k+++ ewyfF+  dkky ++ r+nrat++gyWk+tgkd+ +++ ++ +vg+kktLv++ grap+g +++Wvm
  Tp57577_TGAC_v2_mRNA39111  58 FEPWDLPslSKLKTRDLEWYFFTGLDKKYGNSIRTNRATDRGYWKTTGKDRVIKN-GEVTVGMKKTLVYHLGRAPHGDRSNWVM 140
                                79*****5448888888************************************99.99************************** PP

                        NAM 124 heyrl 128
                                heyr+
  Tp57577_TGAC_v2_mRNA39111 141 HEYRM 145
                                ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.82712167IPR003441NAC domain
SuperFamilySSF1019412.35E-3958167IPR003441NAC domain
PfamPF023652.3E-1460145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MIDVNWKLVR DLCVGTCRNA TDIGFETSLI SKLHSTDHNH TPYSACLSYD TILLDILFEP  60
WDLPSLSKLK TRDLEWYFFT GLDKKYGNSI RTNRATDRGY WKTTGKDRVI KNGEVTVGMK  120
KTLVYHLGRA PHGDRSNWVM HEYRMIDESL AKAGVQDAYV LCRIFEKSGS GPKNGEKYGA  180
PFVEAEWENV VEGQALPLPP VNNEVVLKQE VSAHAPDVNE WVNSLVAVDN EPFRQLPAPD  240
DDDFVETLDL DQDLDTSDTV GSADLPSNYC YGESSNLPQY SQAFINDNKQ LEAAVGIYDN  300
QVDQPDNMAD LYGVNIDSVQ DGYNGETTHN ENPLNFNFTS EDPDLYFDAS AYLTGLGEDL  360
GEEYLETNDI RNLNEVVPSE IDPSVAAMVD EYLTYPDEDI SKYICFDSPM NAGSESLIAN  420
YGQPLIDQNL EGETNGSSLP NKHLFEAQSS NEVLPNNDLD ASNWVSDDAN YFVKQANKFL  480
AHIPAPPAFA SEFPAKKFAL GMHSGSEASS SAHIAAGMIS ITDITFRGNT MDWMVGKNGG  540
FNTIMSTGFP QPDVNSPTMV PLSGLICSKT ALVLSHGWLF LTGFSVVILS LSFKIGCFMY  600
TGVVFLLVLG SLLSRNFDSS YFGTPEGSPY LRVVKTSTFL CILAMPNDEP LVVLEHATAL  660
TIYLPHNLLS LNLSLSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-305817357171NO APICAL MERISTEM PROTEIN
1ut4_B3e-305817357171NO APICAL MERISTEM PROTEIN
1ut7_A3e-305817357171NO APICAL MERISTEM PROTEIN
1ut7_B3e-305817357171NO APICAL MERISTEM PROTEIN
3swm_A4e-305817360174NAC domain-containing protein 19
3swm_B4e-305817360174NAC domain-containing protein 19
3swm_C4e-305817360174NAC domain-containing protein 19
3swm_D4e-305817360174NAC domain-containing protein 19
3swp_A4e-305817360174NAC domain-containing protein 19
3swp_B4e-305817360174NAC domain-containing protein 19
3swp_C4e-305817360174NAC domain-containing protein 19
3swp_D4e-305817360174NAC domain-containing protein 19
4dul_A3e-305817357171NAC domain-containing protein 19
4dul_B3e-305817357171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39111
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469281.10.0NAC domain-containing protein 53 isoform X2
RefseqXP_024640254.10.0NAC domain-containing protein 53 isoform X3
TrEMBLA0A2K3P2Q00.0A0A2K3P2Q0_TRIPR; NAC domain-containing protein
STRINGXP_004496133.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-66NAC domain containing protein 2