PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39115
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 598aa    MW: 67775.7 Da    PI: 9.3006
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39115genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.8e-52892161128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                l+pGfrFhPtdeelv +yLk+kv gk++++ ++i+evdiyk+ePwdL   +++k++++ewyfFs  dkky +g r nrat +gy
  Tp57577_TGAC_v2_mRNA39115  89 LAPGFRFHPTDEELVIYYLKRKVCGKPFRF-DAIAEVDIYKSEPWDLSdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATLKGY 171
                                579**************************9.99**************85348899999************************** PP

                        NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                Wkatg+d++v++ + ++vglkktLvf++grap+g++t+Wvmheyrl
  Tp57577_TGAC_v2_mRNA39115 172 WKATGNDRPVKH-ELRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 216
                                ************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5980246IPR003441NAC domain
PROSITE profilePS5100557.67689245IPR003441NAC domain
PfamPF023651.6E-2691216IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
LKVPFICYLT LNQRPIFSVS LWLHKALIHH LHHHRHHPFF LHIMGREPLL LPTPTPTLPI  60
APSTTTVTTL PLAVSVPSAS STAAPPTSLA PGFRFHPTDE ELVIYYLKRK VCGKPFRFDA  120
IAEVDIYKSE PWDLSDKSRL KTRDQEWYFF SALDKKYGNG GRMNRATLKG YWKATGNDRP  180
VKHELRTVGL KKTLVFHSGR APDGKRTNWV MHEYRLVEEE MERERAGNGS SQPQDAYVLC  240
RVFHKNNIGP PNGQRYAPFV EEEWEECSGM VPGAELVYNG PLDRPVDRPV DRPVDHPVXX  300
XXXXXXXXXX XXXFRAVKEE ITLCRLIPSK PSPPKPNSQT EPREVKALAC VMTTEAFAKD  360
TQSNNKTPLL VQNNKTPLDV NKLPIETQNL LAVCKRESMT EFSSPEKDDS KRMHVDDDSK  420
RMHVDDVDPS PQTDNPKPFP LPQIYKRRRY NLNANHSNVS RDSFPNSQDP CSSTITTAAT  480
TVPTTAAPAK TTNAAPKKHF LSALFSLLES LESKKEKQVS VQPEDFDLGN FESTVPPSVA  540
KYIKRLQSET HKLGLEKETM RFELTSAQAM INILQSRVET LSKENGEMKK MMMMRNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-488824716167NO APICAL MERISTEM PROTEIN
1ut4_B3e-488824716167NO APICAL MERISTEM PROTEIN
1ut7_A3e-488824716167NO APICAL MERISTEM PROTEIN
1ut7_B3e-488824716167NO APICAL MERISTEM PROTEIN
4dul_A3e-488824716167NAC domain-containing protein 19
4dul_B3e-488824716167NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00342DAPTransfer from AT3G10480Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39115
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469278.10.0NAC domain containing protein 50
TrEMBLA0A072VNW30.0A0A072VNW3_MEDTR; NAC transcription factor-like protein
STRINGXP_004496131.11e-134(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81893241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.31e-95NAC domain containing protein 50