PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39141
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18951.3 Da    PI: 7.414
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39141genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.37.5e-121152344
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                               i  +s+r+ +f kR+ngi KK +E+ +L +a+v+ ii+ +++
  Tp57577_TGAC_v2_mRNA39141 11 IVKDSKRKSSFQKRKNGISKKINEITTLSGANVCAIIYDENN 52
                               667899********************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.722152IPR002100Transcription factor, MADS-box
CDDcd002667.72E-21285No hitNo description
SuperFamilySSF554555.36E-19495IPR002100Transcription factor, MADS-box
PfamPF003193.6E-121152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MTGRNMELEY IVKDSKRKSS FQKRKNGISK KINEITTLSG ANVCAIIYDE NNPRATVCPS  60
KEEVQMVLDK FRSFPESEQK KTMVDHEGYV RQSIEKAREK LKKEKDKSKK KEMNNQIYHF  120
IQTGEIDGNV SESDLEDLSS LIVTNIKEVD QRIEWSQAQE GTDN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39141
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594864.11e-59agamous-like MADS-box protein AGL80
TrEMBLA0A2K3N6501e-105A0A2K3N650_TRIPR; Agamous-like mads-box protein agl80-like
STRINGAES651154e-59(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3895922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.27e-24M-type_MADS family protein